key YAMAHA XJ6-S 2009 Owners Manual
Page 4 of 102
IMPORTANT MANUAL INFORMATION
EAU10132
Particularly important information is distinguished in this manual by the following notations:
This is the safety alert symbol. It is used to alert you to potential personal injury 
hazards. Obey all safety messages that follow this symbol to avoid possible injury 
or death.
A WARNING indicates a hazardous situation which, if not avoided, could result in 
death or serious injury.
A NOTICE indicates special precautions that must be taken to avoid damage to the 
vehicle or other property.
A TIP provides key information to make procedures easier or clearer.
WARNING
NOTICETIP
U36CE0E0.book  Page 1  Friday, December 5, 2008  2:33 PM 
Page 15 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-1
3
EAU10976
Immobilizer system This vehicle is equipped with an immo-
bilizer system to help prevent theft by
re-registering codes in the standard
keys. This system consists of the fol-
lowing:
a code re-registering key (with a
red bow)
two standard keys (with a black
bow) that can be re-registered with
new codes
a transponder (which is installed in
the code re-registering key)
an immobilizer unit
an ECU
an immobilizer system indicator
light (See page 3-4.)
The key with the red bow is used to reg-
ister codes in each standard key. Since
re-registering is a difficult process, take
the vehicle along with all three keys to
a Yamaha dealer to have them re-reg-
istered. Do not use the key with the red
bow for driving. It should only be used
for re-registering the standard keys. Al-
ways use a standard key for driving.
NOTICE
ECA11821
DO NOT LOSE THE CODE RE-
REGISTERING KEY! CONTACT
YOUR DEALER IMMEDIATELY
IF IT IS LOST! If the code re-reg-
istering key is lost, registering
new codes in the standard keys
is impossible. The standard
keys can still be used to start
the vehicle, however if code re-
registering is required (i.e., if a
new standard key is made or all
keys are lost) the entire immobi-
lizer system must be replaced.
Therefore, it is highly recom-mended to use either standard
key and keep the code re-regis-
tering key in a safe place.
Do not submerse any key in wa-
ter.
Do not expose any key to exces-
sively high temperatures.
Do not place any key close to
magnets (this includes, but not
limited to, products such as
speakers, etc.).
Do not place items that transmit
electrical signals close to any
key.
Do not place heavy items on any
key.
Do not grind any key or alter its
shape.
Do not disassemble the plastic
part of any key.
Do not put two keys of any im-
mobilizer system on the same
key ring.
Keep the standard keys as well
as keys of other immobilizer
systems away from this vehi-
cle’s code re-registering key.
1. Code re-registering key (red bow)
2. Standard keys (black bow)
U36CE0E0.book  Page 1  Friday, December 5, 2008  2:33 PM 
Page 16 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-2
3
Keep other immobilizer system
keys away from the main switch
as they may cause signal inter-ference.
EAU10471
Main switch/steering lock The main switch/steering lock controls
the ignition and lighting systems, and is
used to lock the steering.TIPBe sure to use the standard key (black
bow) for regular use of the vehicle. To
minimize the risk of losing the code re-
registering key (red bow), keep it in a
safe place and only use it for code re-registering.
EAU38530
ON
All electrical circuits are supplied with
power; the meter lighting, taillight, li-
cense plate light and auxiliary light
come on, and the engine can be start-
ed. The key cannot be removed.TIPThe headlight comes on automatically
when the engine is started and stays on
until the key is turned to “OFF”, even ifthe engine stalls.
EAU10661
OFF
All electrical systems are off. The key
can be removed.
WARNING
EWA10061
Never turn the key to “OFF” or
“LOCK” while the vehicle is moving.
Otherwise the electrical systems will
be switched off, which may result inloss of control or an accident.
U36CE0E0.book  Page 2  Friday, December 5, 2008  2:33 PM 
Page 17 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-3
3
EAU10681
LOCK
The steering is locked, and all electrical
systems are off. The key can be re-
moved.
To lock the steering1. Turn the handlebars all the way to
the left.
2. Push the key in from the “OFF” po-
sition, and then turn it to “LOCK”
while still pushing it.
3. Remove the key.To unlock the steering
Push the key in, and then turn it to
“OFF” while still pushing it.
EAU34341
 (Parking)
The steering is locked, and the taillight,
license plate light and auxiliary light are
on. The hazard lights and turn signal
lights can be turned on, but all other
electrical systems are off. The key can
be removed.
The steering must be locked before the
key can be turned to“”.
NOTICE
ECA11020
Do not use the parking position for
an extended length of time, other-wise the battery may discharge.
1. Push.
2. Turn.
1. Push.
2. Turn.
U36CE0E0.book  Page 3  Friday, December 5, 2008  2:33 PM 
Page 18 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-4
3
EAU11004
Indicator and warning lights 
EAU11020
Turn signal indicator light“” 
This indicator light flashes when the
turn signal switch is pushed to the left or
right.
EAU11060
Neutral indicator light“” 
This indicator light comes on when the
transmission is in the neutral position.
EAU11080
High beam indicator light“” 
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11254
Oil level warning light“” 
This warning light comes on if the en-
gine oil level is low.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”. The warning light should come
on for a few seconds, and then go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.TIP
Even if the oil level is sufficient, the
warning light may flicker when
riding on a slope or during sudden
acceleration or deceleration, but
this is not a malfunction.
This model is also equipped with a
self-diagnosis device for the oil
level detection circuit. If a problem
is detected in the oil level detectioncircuit, the following cycle will be
repeated until the malfunction is
corrected: The oil level warning
light will flash ten times, then go off
for 2.5 seconds. If this occurs,
have a Yamaha dealer check the
vehicle.
EAU11427
Coolant temperature warning 
light“” 
This warning light comes on if the en-
gine overheats. If this occurs, stop the
engine immediately and allow the en-
gine to cool.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”. The warning light should come
on for a few seconds, and then go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.NOTICE
ECA10021
Do not continue to operate the en-gine if it is overheating.
1. Turn signal indicator light“”
2. Immobilizer system indicator light
3. Neutral indicator light“”
4. High beam indicator light“”
5. Engine trouble warning light“”
6. Oil level warning light“”
7. Coolant temperature warning light“”
8. Anti-lock Brake System (ABS) warning 
light“” (for ABS models)
1 2 345
76
8
ABS
U36CE0E0.book  Page 4  Friday, December 5, 2008  2:33 PM 
Page 21 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-7
3
EAU11534
Engine trouble warning light“” 
This warning light comes on or flashes
if a problem is detected in the electrical
circuit monitoring the engine. If this oc-
curs, have a Yamaha dealer check the
self-diagnosis system. (See page 3-10
for an explanation of the self-diagnosis
device.)
The electrical circuit of the warning light
can be checked by turning the key to
“ON”. The warning light should come
on for a few seconds, and then go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.
EAU11545
ABS warning light“” (for ABS 
models) 
If this warning light comes on or flashes
while riding, the ABS may not work cor-
rectly. If this occurs, have a Yamaha
dealer check the system as soon as
possible. (See page 3-14.)
WARNING
EWA10081
If the ABS warning light comes on or
flashes while riding, the brake sys-
tem reverts to conventional braking.
Therefore, be careful not to cause
the wheels to lock during emergen-
cy braking. If the warning light
comes on or flashes while riding,
have a Yamaha dealer check thebrake system as soon as possible.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”. The warning light should come
on for a few seconds, and then go off.
If the warning light does not come on
initially when the key is turned to “ON”,
or if the warning light remains on, have
a Yamaha dealer check the electrical
circuit.
EAU38623
Immobilizer system indicator light 
The electrical circuit of the indicator
light can be checked by turning the key
to “ON”. The indicator light should
come on for a few seconds, and then
go off.If the indicator light does not come on
initially when the key is turned to “ON”,
or if the indicator light remains on, have
a Yamaha dealer check the electrical
circuit.
When the key is turned to “OFF” and 30
seconds have passed, the indicator
light will start flashing indicating the im-
mobilizer system is enabled. After 24
hours have passed, the indicator light
will stop flashing, however the immobi-
lizer system is still enabled.
This model is also equipped with a self-
diagnosis device for the immobilizer
system. (See page 3-10 for an explana-
tion of the self-diagnosis device.)
ABS
U36CE0E0.book  Page 7  Friday, December 5, 2008  2:33 PM 
Page 22 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-8
3
EAU46763
Multi-function meter unit 
WARNING
EWA12422
Be sure to stop the vehicle before
making any setting changes to the
multi-function meter unit. Changing
settings while riding can distract the
operator and increase the risk of anaccident.The multi-function meter unit is
equipped with the following:
a speedometer
a tachometer
an odometer
two tripmeters (which show the
distance traveled since they were
last set to zero)
a fuel reserve tripmeter (which
shows the distance traveled since
the left segment of the fuel meter
started flashing)
a clock
a fuel meter
a coolant temperature display
a self-diagnosis device
TIP
Be sure to turn the key to “ON” be-
fore using the “SELECT” and “RE-
SET” buttons.
For the U.K. only: To switch the
speedometer and odometer/trip-
meter displays between kilometers
and miles, press the “SELECT”button for at least one second.Tachometer
The electric tachometer allows the rider
to monitor the engine speed and keep it
within the ideal power range.
When the key is turned to “ON”, the ta-
chometer needle will sweep once
across the r/min range and then return
to zero r/min in order to test the electri-
cal circuit.
NOTICE
ECA10031
Do not operate the engine in the ta-
chometer red zone.Red zone: 11666 r/min and above
1. Fuel meter
2. Coolant temperature display
3. Speedometer
4. Tachometer
5. Odometer/tripmeter/fuel reserve tripmeter
6.“SELECT” button
7.“RESET” button
8. Clock
1
8
2
3
4
7
6
5
1. Tachometer
2. Tachometer red zone
ABS1
2
U36CE0E0.book  Page 8  Friday, December 5, 2008  2:33 PM 
Page 23 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-9
3 Clock
The clock displays when the key is
turned to “ON”. In addition, the clock
can be displayed for 10 seconds by
pushing the “SELECT” button when the
main switch is in the “OFF”, “LOCK”
or“” position.
To set the clock
1. Turn the key to “ON”.
2. Push the “SELECT” button and
“RESET” button together for at
least two seconds.
3. When the hour digits start flashing,
push the “RESET” button to set the
hours.
4. Push the “SELECT” button, and
the minute digits will start flashing.5. Push the “RESET” button to set
the minutes.
6. Push the “SELECT” button and
then release it to start the clock.
Odometer and tripmeter modes
Push the “SELECT” button to switch
the display between the odometer
mode “ODO” and the tripmeter modes
“TRIP A” and “TRIP B” in the following
order:
TRIP A → TRIP B → ODO → TRIP A
When the fuel amount in the fuel tank
decreases to 3.2 L (0.85 US gal,
0.70 Imp.gal), the left segment of the
fuel meter will start flashing, and the
odometer display will automatically
change to the fuel reserve tripmetermode “F-TRIP” and start counting the
distance traveled from that point. In that
case, push the “SELECT” button to
switch the display between the various
tripmeter and odometer modes in the
following order:
F-TRIP → TRIP A → TRIP B → ODO
→ F-TRIP
To reset a tripmeter, select it by push-
ing the “SELECT” button, and then
push the “RESET” button for at least
one second. If you do not reset the fuel
reserve tripmeter manually, it will reset
itself automatically and the display will
return to the prior mode after refueling
and traveling 5 km (3 mi).
Fuel meter1. Clock1
1. Odometer/tripmeter/fuel reserve tripmeter
1
1. Fuel meter
1
U36CE0E0.book  Page 9  Friday, December 5, 2008  2:33 PM 
Page 25 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-11
3
TIPIf the display indicates error code 52,
this could be caused by transponder in-
terference. If this error code appears,try the following.
1. Use the code re-registering key to
start the engine.TIPMake sure there are no other immobi-
lizer keys close to the main switch, and
do not keep more than one immobilizer
key on the same key ring! Immobilizer
system keys may cause signal interfer-
ence, which may prevent the enginefrom starting.
2. If the engine starts, turn it off and
try starting the engine with the
standard keys.
3. If one or both of the standard keys
do not start the engine, take the
vehicle, the code re-registering
key and both standard keys to a
Yamaha dealer and have the stan-
dard keys re-registered.
If the display indicates any error codes,
note the code number, and then have a
Yamaha dealer check the vehicle.
NOTICE
ECA11590
If the display indicates an error
code, the vehicle should be checked
as soon as possible in order to avoidengine damage.
EAU12331
Anti-theft alarm (optional) This model can be equipped with an
optional anti-theft alarm by a Yamaha
dealer. Contact a Yamaha dealer for
more information.
U36CE0E0.book  Page 11  Friday, December 5, 2008  2:33 PM 
Page 26 of 102
INSTRUMENT AND CONTROL FUNCTIONS
3-12
3
EAU12348
Handlebar switches LeftRight
EAU12350
Pass switch“” 
Press this switch to flash the headlight.
EAU12400
Dimmer switch“/” 
Set this switch to“” for the high
beam and to“” for the low beam.
EAU12460
Turn signal switch“/” 
To signal a right-hand turn, push this
switch to“”. To signal a left-hand
turn, push this switch to“”. When re-
leased, the switch returns to the centerposition. To cancel the turn signal
lights, push the switch in after it has re-
turned to the center position.
EAU12500
Horn switch“” 
Press this switch to sound the horn.
EAU12660
Engine stop switch“/” 
Set this switch to“” before starting
the engine. Set this switch to“” to
stop the engine in case of an emergen-
cy, such as when the vehicle overturns
or when the throttle cable is stuck.
EAU12711
Start switch“” 
Push this switch to crank the engine
with the starter. See page 5-1 for start-
ing instructions prior to starting the en-
gine.
EAU44710
The engine trouble warning light and
ABS warning light (ABS model only) will
come on when the key is turned to “ON”
and the start switch is pushed, but this
does not indicate a malfunction.
1. Pass switch“”
2. Dimmer switch“/”
3. Turn signal switch“/”
4. Horn switch“”
5. Hazard switch“”
1. Engine stop switch“/”
2. Start switch“”
U36CE0E0.book  Page 12  Friday, December 5, 2008  2:33 PM