ignition YAMAHA WR 250F 2016 User Guide

ENGINE REMOVAL
6-3
Removing the electronic parts
Order Part name Q’ty Remarks
Use a suitable stand to raise the front wheel
off the ground.
Seat Refer to “GENERAL CHASSIS” on page 5-1.
Side cover (left/right) Refer to “GENERAL CHASSIS” on page 5-1.
Air scoop (left / right) Refer to “GENERAL CHASSIS” on page 5-1.
Fuel tank Refer to “FUEL TANK” on page 8-1.
Air filter case cover
1 Rectifier/regulator 1
2ECU 1
3 Ignition coil 1
4 Neutral switch 1
5 AC magneto coupler 1 Disconnect.
6 Crankshaft position sensor coupler 1 Disconnect.
7 Coolant temperature sensor coupler 1 Disconnect.
For installation, reverse the removal proce-
dure.
T.R.
T.R.
T.R.T.R.
7 3
6
5
142
LT
New
LS

THROTTLE BODY
8-7
EAS2GB7351
THROTTLE BODY
Removing the throttle body
Order Part name Q’ty Remarks
Seat Refer to “GENERAL CHASSIS” on page 5-1.
Side cover (left/right) Refer to “GENERAL CHASSIS” on page 5-1.
Air scoop (left/right) Refer to “GENERAL CHASSIS” on page 5-1.
Fuel tank Refer to “FUEL TANK” on page 8-1.
ECU Refer to “ENGINE REMOVAL” on page 6-1.
Ignition coil Refer to “ENGINE REMOVAL” on page 6-1.
1 Intake air temperature sensor coupler 1 Disconnect.
2 Breather hose 3 1
3 Air filter case 1
4 Fuel injector coupler 1 Disconnect.
5 Intake air pressure sensor coupler 1 Disconnect.
6 Throttle position sensor coupler 1 Disconnect.
7 Throttle cable cover 1
8 Throttle cable 2
3
1
2
7
11
12
10
9
4
8
6
5
3.5 Nm (0.35 m kgf, 2.5 ft Ibf)T.R.
3.5 Nm (0.35 m kgf, 2.5 ft Ibf)T.R.
7 Nm (0.7 m kgf, 5.1 ft Ibf)T.R.
3.0 Nm (0.30 m kgf, 2.2 ft Ibf)T.R.
10 Nm (1.0 m kgf, 7.2 ft Ibf)T.R.

9
ELECTRICAL SYSTEM
IGNITION SYSTEM.......................................................................................... 9-2
CIRCUIT DIAGRAM ................................................................................... 9-2
TROUBLESHOOTING ............................................................................... 9-4
ELECTRIC STARTING SYSTEM..................................................................... 9-6
CIRCUIT DIAGRAM ................................................................................... 9-6
STARTING CIRCUIT CUT-OFF SYSTEM OPERATION ........................... 9-8
TROUBLESHOOTING ............................................................................. 9-10
CHARGING SYSTEM..................................................................................... 9-12
CIRCUIT DIAGRAM ................................................................................. 9-12
TROUBLESHOOTING ............................................................................. 9-14
LIGHTING SYSTEM....................................................................................... 9-16
CIRCUIT DIAGRAM ................................................................................. 9-16
TROUBLESHOOTING ............................................................................. 9-18
SIGNALING SYSTEM.................................................................................... 9-20
CIRCUIT DIAGRAM ................................................................................. 9-20
TROUBLESHOOTING ............................................................................. 9-22
COOLING SYSTEM........................................................................................ 9-24
CIRCUIT DIAGRAM ................................................................................. 9-24
TROUBLESHOOTING ............................................................................. 9-26
FUEL INJECTION SYSTEM........................................................................... 9-28
CIRCUIT DIAGRAM ................................................................................. 9-28
ECU SELF-DIAGNOSTIC FUNCTION ..................................................... 9-30
TROUBLESHOOTING METHOD ............................................................. 9-31
YAMAHA DIAGNOSTIC TOOL ................................................................ 9-32
TROUBLESHOOTING DETAILS ............................................................. 9-35
FUEL PUMP SYSTEM.................................................................................... 9-56
CIRCUIT DIAGRAM ................................................................................. 9-56
TROUBLESHOOTING ............................................................................. 9-58

ELECTRICAL COMPONENTS....................................................................... 9-60
CHECKING THE SWITCHES .................................................................. 9-64
CHECKING THE BULBS AND BULB SOCKETS .................................... 9-67
CHECKING THE FUSES ......................................................................... 9-68
CHECKING AND CHARGING THE BATTERY ........................................ 9-69
CHECKING THE RELAYS ....................................................................... 9-72
CHECKING THE DIODE .......................................................................... 9-73
CHECKING THE IGNITION SPARK GAP................................................ 9-73
CHECKING THE SPARK PLUG CAP ...................................................... 9-73
CHECKING THE IGNITION COIL ............................................................ 9-74
CHECKING THE CRANKSHAFT POSITION SENSOR........................... 9-74
CHECKING THE LEAN ANGLE SENSOR............................................... 9-75
CHECKING THE STARTER MOTOR OPERATION ................................ 9-75
CHECKING THE STATOR COIL ............................................................. 9-76
CHECKING THE RECTIFIER/REGULATOR ........................................... 9-76
CHECKING THE SPEED SENSOR ......................................................... 9-77
CHECKING THE FUEL SENDER ............................................................ 9-77
CHECKING THE RESISTER ................................................................... 9-77
CHECKING THE RADIATOR FAN MOTOR ............................................ 9-78
CHECKING THE COOLANT TEMPERATURE SENSOR........................ 9-78
CHECKING THE THROTTLE POSITION SENSOR ................................ 9-79
CHECKING THE THROTTLE POSITION SENSOR INPUT VOLTAGE .. 9-79
CHECKING THE INTAKE AIR PRESSURE SENSOR ............................ 9-80
CHECKING THE INTAKE AIR TEMPERATURE SENSOR ..................... 9-80
CHECKING THE FUEL INJECTOR ......................................................... 9-81

IGNITION SYSTEM
9-2
EAS2GB7357
IGNITION SYSTEM
EAS2GB7358CIRCUIT DIAGRAM
ONOFF
ONOFF
BBB
BBB
RRR
RRR/L
Br Br Br
Br Br
(Gy)
(Gy)B/LGyWW WB Gy
B R
WW W
BR
R,R/Y
G
R
Y/B
R,R/W
Br
RL/R
(B)R/YR/WBr/WL/G
Br/W,BrL/W
(B) (B)Br BrL/Y Y/R
G/YBrBB
BrBrL/YY/W
(B)(B)BB GG/Y
RR/L
R Lg
W/B
(B) BGyBr RW/BB/LLYP
G/WB/Y
R/BLgG/YW
Br/W
OL/RY/BB/OL/BSbY/R L/Y P/L
Y/G
(Gy)R/L R/BR/LB/Y
R/WR/L
R/W,BrP/L
R/L R/L
(B)
(B)
(B)
(L)
(L)(B) BR/LLBR/L R/L R/L R/L R/L B/L B/L B/L B/L B/L B/L B/LL L L LBBBB
Br Br Br Br
B/LBr/W
B/LG/WLYB/L
B/LPLB/LY/GL
(B)
(B)B/OBB BSbW/B
Sb
SbG/B
L/G,L/WL/BBrG/BG/BB
BB
(B)
(B)L/BBB B
Br Br
Br BrBr
BB LY
(B)
(B)
(B)
(B)
(B)
GB
Ch Dg
Y B
BRW
Br R
B W
B/WR W
Ch DgYBBrR/WBW
R O
OR/L
B
B
BBBBBB
RRRRRR/L
BrBrBrBrBr
Br
Br
BrBrBrBrR/LR/LR/LR/LR/L
B
LLLP
PL
Y
Y
RR
Br
R/LR/L
R/L
P/L
P/L
R/L
R/L
R/LR/B
R/B
L/RL/Y
L/Y
Y/R
Y/R
G/Y
G/YG/Y
G/Y
B/Y
B/Y
R/LB/LB/L
B/LB/LB/LY/G
Y/GB/L
B/OL/BY/BW/B
W/B
G/B
L/B
W/BW/B
L/BL/BL/GL/W
L/W
L/R
Br/W
Br/W
R/W
R/W
R/Y
R/Y
G/BG/B
G/B
B/O
B/LB/LB/LB/LB/LB/LB/L
G/W
G/W
Br/W
Br/W
R/WR/WBr
O
O
OR
RGy
LLLLBBBB
B
B
B
B
BBB
B
B
RRWW
Y
Y
Dg
Dg
Ch
Ch
RW
BrBrBrBr
Br
B
W
Sb
SbSb
SbBr
Br
B
Br
Lg
Lg
R/L
R
R
RR
Gy
BB
WWWWWW
R
RRGGBB
B
Y/B
RB
BB
B
B
Br
Br
Br
B
L/G
B/L
B/WB/W
B

IGNITION SYSTEM
9-3
1. Joint connector
2. Joint connector
4. AC magneto
9. Battery
10.Frame ground
11.Starter relay
12.Main fuse
22.ECU (engine control unit)
23.Ignition coil
24.Spark plug
30.Joint connector
35.Lean angle sensor
36.Engine stop switch
48.Frame ground
49.Ignition coil sub-lead

IGNITION SYSTEM
9-4
EAS2GB7359TROUBLESHOOTING
The ignition system fails to operate (no spark or intermittent spark).
TIP
Before troubleshooting, remove the following part (s):
1. Seat
2. Side cover (left/right)
3. Air scoop (left/right)
4. Fuel tank
5. Fuel tank
1. Check the fuse.
Refer to “CHECKING THE FUSES”
on page 9-68.NG 
Replace the fuse(s).
OK 
2. Check the battery.
Refer to “CHECKING AND
CHARGING THE BATTERY” on
page 9-69.NG 
• Clean the battery terminals.
• Recharge or replace the battery.
OK 
3. Check the spark plug.
Refer to “CHECKING THE FUSES”
on page 9-68.NG 
Re-gap or replace the spark plug.
OK 
4. Check the ignition spark gap.
Refer to “CHECKING THE IGNI-
TION SPARK GAP” on page 9-73.OK 
The ignition system is normal.
NG 
5. Check the ignition coil.
Refer to “CHECKING THE IGNI-
TION COIL” on page 9-74.NG 
Replace the ignition coil.
OK 
6. Check the crankshaft position sen-
sor.
Refer to “CHECKING THE CRANK-
SHAFT POSITION SENSOR” on
page 9-74.NG 
Replace the stator assembly.
OK 
7. Check the engine stop switch.
Refer to “CHECKING THE
SWITCHES” on page 9-64.NG 
Replace the engine stop switch.
OK 

IGNITION SYSTEM
9-5
8. Check the lean angle sensor.
Refer to “CHECKING THE LEAN
ANGLE SENSOR” on page 9-75.NG 
Replace the lean angle sensor.
OK 
9. Check the entire ignition system’s
wiring.
Refer to “CIRCUIT DIAGRAM” on
page 9-2.NG 
Properly connect or repair the ignition sys-
tem’s wiring.
OK 
Replace the ECU.

FUEL INJECTION SYSTEM
9-30
EAS2GB7374ECU SELF-DIAGNOSTIC FUNCTION
The ECU is equipped with a self-diagnostic function in order to ensure that the fuel injection system
is operating normally. If this function detects a malfunction in the system, it immediately operates the
engine under substitute characteristics and illuminates the engine trouble warning light to alert the
rider that a malfunction has occurred in the system. Once a malfunction has been detected, a fault
code number is stored in the memory of the ECU.
• To inform the rider that the fuel injection system is not functioning, the engine trouble warning light
flashes while the start switch is being pushed to start the engine.
• If a malfunction is detected in the system by the self-diagnostic function, the ECU provides an ap-
propriate substitute characteristic operation, and alerts the rider of the detected malfunction by illu-
minating the engine trouble warning light.
Engine trouble warning light indication and fuel injection system operation
* The warning light flashes when any one of the following conditions is present and the start switch
is pushed:
Checking the engine trouble warning light
The engine trouble warning light comes on for around 2 seconds when pushing the start switch to
turn on the meter light and the engine trouble warning light comes on while the start switch is being
pushed.Warning light indica-
tionECU operationFuel injection opera-
tionVehicle operation
Flashing* Warning provided
when unable to start
engineOperation stopped Cannot be operated
Remains on Malfunction detected Operated with substi-
tute characteristics in
accordance with the
description of the mal-
functionCan or cannot be oper-
ated depending on the
fault code
12: Crankshaft position sensor 41: Lean angle sensor
(open or short circuit)
30: Lean angle sensor
(latch up detected)50: ECU internal malfunction
(faulty ECU memory)
33: Ignition coil
(Malfunction detected in the primary wire
of the ignition coil)
a. The meter light does not come on.
b. The meter light comes on.
c. Light OFF
d. Light ON for 2 seconds
ab
cdc

FUEL INJECTION SYSTEM
9-31
ECU detects an abnormal signal from a sensor
If the ECU detects an abnormal signal from a sensor while the vehicle is being driven, the ECU illu-
minates the engine trouble warning light and provides the engine with alternate operating instructions
that are appropriate for the type of malfunction.
When an abnormal signal is received from a sensor, the ECU processes the specified values that are
programmed for each sensor in order to provide the engine with alternate operating instructions that
enable the engine to continue operating or stop operating, depending on the conditions.
EAS2GB7375TROUBLESHOOTING METHOD
The engine operation is not normal and the engine trouble warning light comes on.
1. Check:
• Fault code number
▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼▼
a. Connect the Yamaha diagnostic tool. Refer to “YAMAHA DIAGNOSTIC TOOL” on page 9-32.
b. Check the fault code number displayed on the Yamaha diagnostic tool.
c. Identify the faulty system with the fault code number.
d. Identify the probable cause of the malfunction.
▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲▲
2. Check and repair the probable cause of the malfunction.
3. Perform the reinstatement action for the fuel injection system. Refer to “Confirmation of service
completion” in the appropriate table in “TROUBLESHOOTING DETAILS” on page 9-35.
4. After pushing the engine stop switch, push the start switch to check whether the fault code no. is
displayed.
TIP
If another fault code number is displayed, repeat steps (1) to (4) until no fault code number is dis-
played.
5. Erase the malfunction history in the diagnostic mode. Refer to “SENSOR OPERATION TABLE”
(Diagnostic code No.62).
TIP
Turning off the meter light will not erase the malfunction history.
The engine operation is not normal, but the engine trouble warning light does not come on.
1. Check the operation of the following sensors and actuators in the diagnostic mode. Refer to
“TROUBLESHOOTING DETAILS” on page 9-35.
If a malfunction is detected in the sensors or actuators, repair or replace all faulty parts.
If no malfunction is detected in the sensors and actuators, check and repair the inner parts of the
engine.Fault code No. No fault code No.
Check and repair. Refer to “TROUBLESHOOT-
ING DETAILS” on page 9-35.
Monitor the operation of the sensors and actua-
tors in the diagnostic mode. Refer to “TROU-
BLESHOOTING DETAILS” on page 9-35 and
“LIST OF SELF-DIAGNOSTIC AND FAIL-SAFE
ACTIONS” on page 10-5.Check and repair.
01: Throttle position sensor signal (throttle angle)
30: Ignition coil
36: Injector