ignition YAMAHA WR 250F 2016 Owner's Manual

FUEL INJECTION SYSTEM
9-32
EAS2GB7376YAMAHA DIAGNOSTIC TOOL
This model uses the Yamaha diagnostic tool to identify malfunctions.
For information about using the Yamaha diagnostic tool, refer to the operation manual that is included
with the tool.
FEATURES OF THE YAMAHA DIAGNOSTIC TOOL
A diagnosis can be made more quickly than traditional methods with the Yamaha diagnostic tool.
Using this software, ECU and sensor data, as well as fault diagnosis, vehicle maintenance, and any
necessary information can be recorded and displayed on your computer screen through a USB
adapter connected to the computer interface with a communication cable connected to the vehicle’s
ECU.
Data obtained in various functions can be saved as vehicle history, and can be accumulated.
FUNCTIONS OF THE YAMAHA DIAGNOSTIC TOOL
However, the diagnostic tool cannot be used to freely change the basic vehicle functions, such as
adjusting the ignition timing.
CONNECTING THE YAMAHA DIAGNOSTIC TOOL
1. Remove the coupler for connecting setting tool.Yamaha diagnostic tool
90890-03231
Yamaha diagnostic tool (US)
90890-03234
Fault diagnosis mode Fault codes recorded on the ECU are read, and the con-
tents are displayed.
Function diagnostic mode Check the operation of the output value of each sensor
and actuator.
Inspection mode Determine whether each sensor or actuator is functioning
properly.
CO adjustment mode Adjust the concentration of CO admissions during idling.
Monitoring mode Displays a graph of sensor output values for actual oper-
ating conditions.
Logging mode Records and saves the sensor output value in actual driv-
ing conditions.
View log Displays the logging data.
ECU rewrite If necessary, the ECU is rewritten using the ECU rewrite
data provided by Yamaha. Ignition timing adjustment, etc.
cannot be changed from the vehicle’s original state.

FUEL INJECTION SYSTEM
9-45
2 Installed condition of lean an-
gle sensor.Check the installed direction
and condition of the sensor.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 3.
3 Defective lean angle sensor. Execute the diagnostic mode.
(Code No. 08)
Replace if defective.
Refer to “CHECKING THE
LEAN ANGLE SENSOR” on
page 9-75.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 4.
4 Malfunction in ECU. Replace the ECU.
Fault code No. 33
ItemIgnition coil: open or short circuit detected in the primary lead
of the ignition coil.
Fail-safe systemUnable to start engine
Unable to drive vehicle
Diagnostic code No.30
ActuationActuates the ignition coil five times at one-second intervals.
The engine trouble warning light and the “WARNING” on the
Yamaha diagnostic tool screen come on each time the ignition coil
is actuated.
ProcedureCheck that a spark is generated five times.
• Connect an ignition checker.
ItemProbable cause of malfunc-
tion and checkMaintenance jobConfirmation of service
completion
1 Connection of ignition coil
coupler.
Check the locking condition
of the coupler.
Disconnect the coupler and
check the pins (bent or bro-
ken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler securely
or repair/replace the wire har-
ness.Start the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 2.
2 Connection of wire harness
ECU coupler.
Check the locking condition
of the coupler.
Disconnect the coupler and
check the pins (bent or bro-
ken terminals and locking
condition of the pins).Improperly connected 
Connect the coupler securely
or repair/replace the wire har-
ness.Start the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 3. Fault code No. 30
Item Latch up detected.

FUEL INJECTION SYSTEM
9-46
3 Connection of sub wire har-
ness coupler.Check the lock-
ing condition of the
coupler.Disconnect the cou-
pler and check the pins (bent
or broken terminals and lock-
ing condition of the pins).Improperly connected 
Connect the coupler secure-
lyor repair/replace the sub
wire harness.Start the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 4.
4 Wire harness continuity. Open or short circuit  Re-
place the wire harness.
Between ignition coil coupler
and ECU coupler.
orange–orangeStart the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 5.
5 Installed condition of ignition
coil.
Check for looseness or
pinching.Improperly installed sensor
 Reinstall or replace the
sensor.Start the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 6.
6 Defective ignition coil. (test
the primary coils for continu-
ity)Check the ignition coil.
Replace if defective.
Refer to “CHECKING THE
IGNITION COIL” on page 9-
74.Start the engine and let it idle
for approximately 5 seconds.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Go to item 7.
7 Malfunction in ECU. Execute the diagnostic mode
(diagnostic code No. 30).
No spark  Replace the
ECU. Fault code No. 33
ItemIgnition coil: open or short circuit detected in the primary lead
of the ignition coil.

FUEL INJECTION SYSTEM
9-50
TIP
Before troubleshooting, disconnect the starter motor lead from the starter relay.
Fault code No. 44
ItemEEPROM fault code number: an error is detected while read-
ing or writing on EEPROM.
Fail-safe systemAble/Unable to start engine
Able/Unable to drive vehicle
Diagnostic code No.60
Diagnostic tool displayEEPROM fault code display
• 00: No fault
• 01: CO adjustment value
• 07: Setting tool adjustment values 0–8 for fuel injection amount or
ignition timing
Procedure—
ItemProbable cause of malfunc-
tion and checkMaintenance jobConfirmation of service
completion
1 Locate the malfunction Execute the diagnostic mode
(Code No. 60).
00: Go to item 4.
01: Go to item 2.
07: Go to item 3.—
2 “01” is indicated in Diagnostic
mode (Code No. 60) EEP-
ROM data error for adjust-
ment of CO concentrationChange the CO concentra-
tion, and rewrite in EEPROM.
After this adjustment, push
the engine stop switch, then
push the start switch.
Memory not recovered  Re-
place the ECU.Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Repeat the proce-
dure in item 1. If the same
number is indicated, perform
the procedure in item 4.
3 “07” is indicated in Diagnostic
mode (Code No. 60) EEP-
ROM data error for setting
tool adjustment values for
fuel injection amount or igni-
tion timing.Erase the setting map in the
diagnostic mode (diagnostic
code No. 65).Push the start switch.
Fault code number is not dis-
played  Service is finished.
Fault code number is dis-
played  Repeat the proce-
dure in item 1. If the same
number is indicated, perform
the procedure in item 4.
4 Malfunction in ECU. Replace the ECU.

ELECTRICAL COMPONENTS
9-61
1. Rectifier/regulator
2. Clutch switch
3. Ignition coil
4. ECU (engine control unit)
5. Fuel sender
6. Fuel pump
7. Battery
8. Resistor
9. Neutral switch
10.Radiator fan motor
11.Injector

ELECTRICAL COMPONENTS
9-68
Checking the condition of the bulb sockets
The following procedure applies to all of the
bulb sockets.
1. Check:
• Bulb socket (for continuity)
(with the pocket tester)
No continuity  Replace.
TIP
Check each bulb socket for continuity in the
same manner as described in the bulb section;
however, note the following.
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a. Install a good bulb into the bulb socket.
b. Connect the pocket tester probes to the re-
spective leads of the bulb socket.
c. Check the bulb socket for continuity. If any of
the readings indicate no continuity, replace
the bulb socket.
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EAS2GB7384CHECKING THE FUSES
The following procedure applies to all of the
fuses.
ECA
NOTICE
To avoid a short circuit, always turn off the
meter when checking or replacing a fuse.
1. Remove:
• Side cover (left/right)
• Seat
Refer to “GENERAL CHASSIS” on page 5-
1.
2. Check:
• Main fuse “1”
• Radiator fan motor fuse “2”
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a. Connect the pocket tester to the fuse and
check the continuity.
TIP
Set the pocket tester selector to “ 1”.
b. If the pocket tester indicates “”, replace the
fuse.
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3. Replace:
• Fuse
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a. The meter light goes off.
b. Install a new fuse of the correct amperage
rating.
c. Turn on the meter light to verify if the electri-
cal circuit is operational.
d. If the fuse immediately blows again, check
the electrical circuit.
EWA
WARNING
Never use a fuse with an amperage rating
other than that specified. Improvising or us-
ing a fuse with the wrong amperage rating
may cause extensive damage to the electri-
cal system, cause the lighting and ignition
systems to malfunction and could possibly
cause a fire.
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Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
1
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
FusesAmper-
age ratingQ’ty
Main 15 A 1
Spare 15 A 1
Radiator fan motor 5 A 1
2

ELECTRICAL COMPONENTS
9-73
EAS2GB7387CHECKING THE DIODE
1. Check:
•Diode
Out of specification  Replace.
TIP
The pocket tester and the analog pocket tester
readings are shown in the following table.
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a. Disconnect the diode from the wire harness.
b. Connect the pocket tester ( 1) to the di-
ode coupler as shown.
c. Check the diode for continuity.
d. Check the diode for no continuity.
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EAS2GB7388CHECKING THE IGNITION SPARK GAP
1. Check:
• Ignition spark gap
Out of specification  Perform the ignition
system troubleshooting, starting with step 4.
Refer to “TROUBLESHOOTING” on page 9-
4.
TIP
If the ignition spark gap is within specification,
the ignition system circuit is operating normally.
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a. Remove the spark plug cap from the spark
plug.
b. Connect the ignition checker “1” as shown.
c. Push the engine stop switch.
d. Measure the ignition spark gap “a”.
e. Crank the engine by pushing the start switch
and gradually increase the spark gap until a
misfire occurs.
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EAS2GB7389CHECKING THE SPARK PLUG CAP
1. Remove:
• Spark plug cap
(from the spark plug lead)
2. Check:
• Spark plug cap resistance
Out of specification  Replace. Result
Continuity
(between “3” to “4”)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
No continuity
Tester positive lead  Sky blue
“1”
Tester negative lead  Green/
Black “2”
Continuity
Tester positive lead  Green/
Black “2”
Tester negative lead  Sky blue
“1”
No continuity
Tester positive lead  Red “3”
Tester negative lead  Red/Blue
“4”
Continuity
Tester positive lead  Red/Blue
“4”
Tester negative lead  Red “3”
2
1
4
3
R Sb
G/B R/L
Minimum ignition spark gap
6.0 mm (0.24 in)
Ignition checker
90890-06754
Oppama pet–4000 spark checker
YM-34487
2. Spark plug cap
Resistance
10.00 k

ELECTRICAL COMPONENTS
9-74
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a. Connect the pocket tester ( 1k) to the
spark plug cap.
b. Measure the spark plug cap resistance.
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EAS2GB7390CHECKING THE IGNITION COIL
1. Disconnect:
• Ignition coil terminal
(from the sub wire harness)
• Spark plug cap
(from the ignition coil)
2. Check:
• Primary coil resistance
Out of specification  Replace.
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a. Connect the pocket tester ( 1) to the igni-
tion coil.b. Measure the primary coil resistance.
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3. Check:
• Secondary coil resistance
Out of specification  Replace.
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a. Connect the pocket tester ( 1k) to the ig-
nition coil.
b. Measure the secondary coil resistance.
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EAS2GB7391CHECKING THE CRANKSHAFT POSITION
SENSOR
1. Disconnect:
• Crankshaft position sensor coupler
(from the wire harness)
2. Check:
• Crankshaft position sensor resistance Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
Primary coil resistance
2.16–2.64 
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Ignition coil terminal 1 “1”
• Negative tester probe 
Ignition coil terminal 2 “2”
Secondary coil resistance
8.64–12.96 k
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Ignition coil terminal 1 “1”
• Negative tester probe 
Spark plug lead “2”

ELECTRICAL COMPONENTS
9-76
b. Check the starter motor operation.
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EAS28150CHECKING THE STATOR COIL
1. Disconnect:
• Stator coil coupler
(from the wire harness)
2. Check:
• Stator coil resistance
Out of specification  Replace the stator
coil.
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a. Connect the pocket tester ( 1) to the sta-
tor coil coupler as shown.b. Measure the stator coil resistance.
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1. Check:
• Charging voltage
Out of specification  Replace the rectifier/
regulator.
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a. Set the digital tachometer to the ignition coil.
b. Connect the pocket tester (DC 20 V) to the
rectifier/regulator coupler as shown.
c. Start the engine and let it run at approxi-
mately 5000 r/min.
d. Measure the charging voltage.
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Stator coil resistance
0.528–0.792  (W–W)
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
White “1”
• Negative tester probe 
White “2”
• Positive tester probe 
White “1”
• Negative tester probe 
White “3”
• Positive tester probe 
White “2”
• Negative tester probe 
White “3”
No load regulated voltage
14.1–14.9 V
Digital tachometer
90890-06760
Digital tachometer
YU-39951-B
Pocket tester
90890-03112
Analog pocket tester
YU-03112-C
• Positive tester probe 
Red “1”
• Negative tester probe 
Black “2”
123
12

TROUBLESHOOTING
10-1
EAS2GB7405
TROUBLESHOOTING
EAS2GB7406GENERAL INFORMATION
TIP
The following guide for troubleshooting does
not cover all the possible causes of trouble. It
should be helpful, however, as a guide to basic
troubleshooting. Refer to the relative procedure
in this manual for checks, adjustments, and re-
placement of parts.
EAS2GB7407STARTING FAILURES
Engine
1. Cylinder and cylinder head
• Loose spark plug
• Loose cylinder head or cylinder
• Damaged cylinder head gasket
• Damaged cylinder gasket
• Worn or damaged cylinder
• Incorrect valve clearance
• Improperly sealed valve
• Incorrect valve-to-valve-seat contact
• Incorrect valve timing
• Faulty valve spring
• Seized valve
2. Piston and piston ring(s)
• Improperly installed piston ring
• Damaged, worn or fatigued piston ring
• Seized piston ring
• Seized or damaged piston
3. Air filter
• Improperly installed air filter
• Clogged air filter element
4. Crankcase and crankshaft
• Improperly assembled crankcase
• Seized crankshaft
Fuel system
1. Fuel tank
• Empty fuel tank
• Clogged fuel tank breather hose
• Deteriorated or contaminated fuel
• Clogged or damaged fuel hose
2. Fuel pump
• Faulty fuel pump
3. Throttle body
• Deteriorated or contaminated fuel
• Sucked-in air
Electrical system
1. Spark plug
• Incorrect spark plug gap• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
2. Ignition coil
• Cracked or broken ignition coil body
• Broken or shorted primary or secondary
coils
3. Ignition system
• Faulty ECU
• Faulty crankshaft position sensor
• Broken generator rotor woodruff key
4. Switches and wiring
• Faulty ECU
• Faulty engine stop switch
• Broken or shorted wiring
• Faulty neutral switch
• Improperly grounded circuit
• Loose connections
EAS2GB7408INCORRECT ENGINE IDLING SPEED
Engine
1. Cylinder and cylinder head
• Incorrect valve clearance
• Damaged valve train components
2. Air filter
• Clogged air filter element
Fuel system
1. Throttle body
• Damaged or loose throttle body joint
• Improperly synchronized throttle bodies
• Improper throttle cable free play
• Flooded throttle body
Electrical system
1. Spark plug
• Incorrect spark plug gap
• Incorrect spark plug heat range
• Fouled spark plug
• Worn or damaged electrode
• Worn or damaged insulator
• Faulty spark plug cap
2. Ignition coil
• Broken or shorted primary or secondary
coils
• Cracked or broken ignition coil
3. Ignition system
• Faulty ECU
• Faulty crankshaft position sensor
• Broken generator rotor woodruff key