YAMAHA FJR1300AS 2006 User Guide

SAFETY INFORMATION
1-4
1 tor and may limit control ability,
therefore, such accessories are
not recommended.


Use caution when adding electri-
cal accessories. If electrical acces-
sories exceed the capacity of the
motorcycle’s electrical system, an
electric failure could result, which
could cause a dangerous loss of
lights or engine power.
Gasoline and exhaust gas


GASOLINE IS HIGHLY FLAMMA-
BLE:
Always turn the engine off when
refueling.
Take care not to spill any gaso-
line on the engine or exhaust
system when refueling.
Never refuel while smoking or in
the vicinity of an open flame.


Never start the engine or let it run
for any length of time in a closed
area. The exhaust fumes are poi-
sonous and may cause loss of
consciousness and death within a
short time. Always operate your
motorcycle in an area that has ad-
equate ventilation.


Always turn the engine off before
leaving the motorcycle unattended
and remove the key from the main
switch. When parking the motor-
cycle, note the following:
The engine and exhaust system
may be hot, therefore, park the
motorcycle in a place where pe-
destrians or children are not like-
ly to touch these hot areas.
Do not park the motorcycle on a
slope or soft ground, otherwise it
may fall over.
Do not park the motorcycle near
a flammable source, (e.g., a ker-
osene heater, or near an open
flame), otherwise it could catch
fire.


When transporting the motorcycle
in another vehicle, make sure that
it is kept upright. If the motorcycle
should lean over, gasoline may
leak out of the fuel tank.


If you should swallow any gaso-
line, inhale a lot of gasoline vapor,
or allow gasoline to get into your
eyes, see your doctor immediately.
If any gasoline spills on your skinor clothing, immediately wash the
affected area with soap and water
and change your clothes.
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DESCRIPTION
2-1
2
EAU10410
Left view1. Accessory box (page 3-25)
2. Front fork spring preload adjusting bolt (page 3-28)
3. Front fork rebound damping force adjusting knob (page 3-28)
4. Owner’s tool kit (page 6-1)
5. Rider seat (page 3-21)
6. Passenger seat (page 3-21)
7. Final gear oil filler bolt (page 6-10)
8. Final gear oil drain bolt (page 6-10)9. YCC-S clutch fluid reservoir (page 6-19)
10.Shock absorber assembly spring preload adjusting lever (page 3-30)
11.Air filter element (page 6-13)
12.Shift pedal (page 3-17)
13.Engine oil filler cap (page 6-8)
14.Engine oil filter cartridge (page 6-8)
15.Engine oil level check window (page 6-8)U2D2EAE0.book Page 1 Monday, June 26, 2006 2:55 PM

DESCRIPTION
2-2
2
EAU10420
Right view1. Storage compartment (page 3-25)
2. Fuel tank cap (page 3-19)
3. Fuse box (page 6-26)
4. Windshield (page 3-15)
5. Battery (page 6-25)
6. Main fuse (page 6-26)
7. Front fork compression damping force adjusting screw (page 3-28)
8. Brake pedal (page 3-18)9. Shock absorber assembly rebound damping force adjusting knob
(page 3-30)
10.Rear brake fluid reservoir (page 6-19)
U2D2EAE0.book Page 2 Monday, June 26, 2006 2:55 PM

DESCRIPTION
2-3
2
EAU10430
Controls and instruments1. Rear view mirror (page 3-28)
2. Left handlebar switches (page 3-15)
3. Tachometer (page 3-7)
4. Speedometer (page 3-7)
5. Multi-function display (page 3-7)
6. Front brake fluid reservoir (page 6-19)
7. Right handlebar switches (page 3-15)
8. Brake lever (page 3-18)9. Throttle grip (page 6-14)
10.Main switch/steering lock (page 3-2)
11.Headlight beam adjusting knob (page 3-26)
12.Grip warmer adjusting knob (page 3-31)
13.Hand shift lever (page 3-17)U2D2EAE0.book Page 3 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-1
3
EAU40472
YCC-S system This vehicle features the YCC-S
(Yamaha Chip Controlled-Shift) sys-
tem.
The basic function of this system allows
the rider to shift gears without the use of
a clutch lever. Furthermore, a shift lever
is equipped on the handlebar, allowing
the rider to choose to shift gears either
with the shift pedal or by hand.
When the engine is started and the shift
pedal or the shift lever is moved, a sig-
nal is sent to the MCU (Motor Control
Unit) which disengages the clutch, then
the shift is made. The MCU engages
the clutch once the engine is running at
the proper speed. Clutch engagement
is controlled optimally by the MCU ac-
cording to engine r/min, engine require-
ments, and riding conditions. See
“Handlebar switches” (page 3-15) and
OPERATION AND IMPORTANT
RIDING POINTS (page 5-1) for further
explanation of this system.
NOTE:This is not an automatic transmission,
only the clutch system is automatic.The gears must be shifted by the rider.
EAU10972
Immobilizer system This vehicle is equipped with an immo-
bilizer system to help prevent theft by
re-registering codes in the standard
keys. This system consists of the fol-
lowing.

a code re-registering key (with a
red bow)


two standard keys (with a black
bow) that can be re-registered with
new codes


a transponder (which is installed in
the code re-registering key)


an immobilizer unit


an ECU
1. Code re-registering key (red bow)
2. Standard keys (black bow)
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INSTRUMENT AND CONTROL FUNCTIONS
3-2
3


an immobilizer system indicator
light (See page 3-4.)
The key with the red bow is used to reg-
ister codes in each standard key. Since
re-registering is a difficult process, take
the vehicle along with all three keys to
a Yamaha dealer to have them re-reg-
istered. Do not use the key with the red
bow for driving. It should only be used
for re-registering the standard keys. Al-
ways use a standard key for driving.
CAUTION:
ECA11820


DO NOT LOSE THE CODE RE-
REGISTERING KEY! CONTACT
YOUR DEALER IMMEDIATELY
IF IT IS LOST! If the code re-reg-
istering key is lost, registering
new codes in the standard keys
is impossible. The standard
keys can still be used to start
the vehicle, however if code re-
registering is required (i.e., if a
new standard key is made or all
keys are lost) the entire immobi-
lizer system must be replaced.
Therefore, it is highly recom-mended to use either standard
key and keep the code re-regis-
tering key in a safe place.


Do not submerse any key in wa-
ter.


Do not expose any key to exces-
sively high temperatures.


Do not place any key close to
magnets (this includes, but not
limited to, products such as
speakers, etc.).


Do not place heavy items on any
key.


Do not grind any key or alter its
shape.


Do not disassemble the plastic
part of any key.


Do not put two keys of any im-
mobilizer system on the same
key ring.


Keep the standard keys as well
as keys of other immobilizer
systems away from this vehi-
cle’s code re-registering key.


Keep other immobilizer system
keys away from the main switch
as they may cause signal inter-ference.
EAU10471
Main switch/steering lock The main switch/steering lock controls
the ignition and lighting systems, and is
used to lock the steering.NOTE:Be sure to use the standard key (black
bow) for regular use of the vehicle. To
minimize the risk of losing the code re-
registering key (red bow), keep it in a
safe place and only use it for code re-registering.
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INSTRUMENT AND CONTROL FUNCTIONS
3-3
3
EAU26811
ON
All electrical circuits are supplied with
power; the meter lighting, taillights, li-
cense plate light and auxiliary lights
come on, and the engine can be start-
ed. The key cannot be removed.NOTE:The headlights come on automatically
when the engine is started and stay onuntil the key is turned to “OFF”.
EAU10660
OFF
All electrical systems are off. The key
can be removed.
EAU10690
LOCK
The steering is locked, and all electrical
systems are off. The key can be re-
moved.To lock the steering
1. Turn the handlebars all the way to
the left or right.
2. Push the key in from the “OFF” po-
sition, and then turn it to “LOCK”
while still pushing it.
3. Remove the key.To unlock the steering
Push the key into the main switch, and
then turn it to “OFF” while still pushing
it.
WARNING
EWA10060
Never turn the key to “OFF” or
“LOCK” while the vehicle is moving,
otherwise the electrical systems will
be switched off, which may result in
loss of control or an accident. Make
sure that the vehicle is stopped be-
fore turning the key to “OFF” or“LOCK”.
1. Push.
2. Turn.
1. Push.
2. Turn.
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INSTRUMENT AND CONTROL FUNCTIONS
3-4
3
EAU39460
(Parking)
The steering is locked, and the tail-
lights, license plate light and auxiliary
lights are on. The hazard lights and turn
signal lights can be turned on, but all
other electrical systems are off. The
key can be removed.
The steering must be locked before the
key can be turned to “”.
CAUTION:
ECA11020
Do not use the parking position for
an extended length of time, other-wise the battery may discharge.
EAU11003
Indicator and warning lights
EAU11030
Turn signal indicator lights “” and
“”
The corresponding indicator light flash-
es when the turn signal switch is
pushed to the left or right.
EAU11060
Neutral indicator light “”
This indicator light comes on when the
transmission is in the neutral position.
EAU11080
High beam indicator light “”
This indicator light comes on when the
high beam of the headlight is switched
on.
EAU11120
Oil level warning light “”
This warning light comes on when the
engine oil level is low.
The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.NOTE:Even if the oil level is sufficient, the
warning light may flicker when riding on
a slope or during sudden acceleration
or deceleration, but this is not a mal-function.
1. Left turn signal indicator light “”
2. Right turn signal indicator light “”
3. Engine trouble “”/YCC-S “” indi-
cators and warning light
4. Anti-lock Brake System (ABS) warning light
“”
5. Neutral indicator light “”
6. High beam indicator light “”
7. Oil level warning light “”
8. Immobilizer system indicator light
SHIFT
ABS
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INSTRUMENT AND CONTROL FUNCTIONS
3-5
3
EAU40512
Engine trouble “”/YCC-S
“” indicators and warning
light
Engine trouble indicator “” andwarning lightThis indicator is displayed and the
warning light comes on or flashes when
an electrical circuit monitoring the en-
gine is defective. When this occurs,
have a Yamaha dealer check the self-
diagnosis system. (See page 3-7 for an
explanation of the self-diagnosis de-
vice.)YCC-S indicator “” and warning
lightThis indicator is displayed and the
warning light comes on if there is a mal-
function in the YCC-S. If this occurs:

YCC-S is disabled, so it will be im-
possible to shift out of the gear you
are in


the clutch may stay engaged, so a
shuddering sensation may be felt
as you come to a stop
Stop the vehicle when it is safe to do so,
and park it away from traffic. Have a
Yamaha dealer check the YCC-S.
NOTE:In order to be able to move the vehicle
after it has stopped, if shifting is impos-
sible using the hand shift lever and shift
pedal, proceed as follows:
Place the vehicle on the centerstand,
then while rotating the rear wheel, push
the shift pedal rod and pivot forward un-
til the transmission is in the neutral po-sition.
The electrical circuit of the indicators
and warning light can be checked by
turning the key to “ON”. If the indicators
and warning light do not come on for a
1. Engine trouble indicator “” and warning
lightSHIFT
1. YCC-S indicator “” and warning light
SHIFTSHIFT
1. Shift pedal rod pivot
2. Shift pedal rod
U2D2EAE0.book Page 5 Monday, June 26, 2006 2:55 PM

INSTRUMENT AND CONTROL FUNCTIONS
3-6
3few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuits.
NOTE:This warning light will come on when
the key is turned to “ON” and the start
switch “” is pushed, but this does notindicate a malfunction.
EAU40870
ABS warning light “”
If this warning light comes on or flashes
while riding, the ABS may be defective.
If this occurs, have a Yamaha dealer
check the system as soon as possible.
(See page 3-18.)
WARNING
EWA10081
If the ABS warning light comes on or
flashes while riding, the brake sys-
tem reverts to conventional braking.
Therefore, be careful not to cause
the wheels to lock during emergen-
cy braking. If the warning light
comes on or flashes while riding,
have a Yamaha dealer check thebrake system as soon as possible.The electrical circuit of the warning light
can be checked by turning the key to
“ON”.
If the warning light does not come on or
remains on, have a Yamaha dealer
check the electrical circuit.
NOTE:This warning light will come on when
the key is turned to “ON” and the start
switch “” is pushed, but this does notindicate a malfunction.
EAU38620
Immobilizer system indicator light
The electrical circuit of the indicator
light can be checked by turning the key
to “ON”.
If the indicator light does not come on
for a few seconds, then go off, have a
Yamaha dealer check the electrical cir-
cuit.
When the key is turned to “OFF” and 30
seconds have passed, the indicator
light will start flashing indicating the im-
mobilizer system is enabled. After 24
hours have passed, the indicator light
will stop flashing, however the immobi-
lizer system is still enabled.This model is also equipped with a self-
diagnosis device for the immobilizer
system. (See page 3-7 for an explana-
tion of the self-diagnosis device.)
ABS
U2D2EAE0.book Page 6 Monday, June 26, 2006 2:55 PM